Germa definitely got their lifespans taken, and I bet Jinbei did as well. Last we saw them, they were completely surrounded on all fronts, and here we see them sailing away without the Big Mom pirates in pursuit.
We've already seen Big Mom is willing to trade peoples lifespans for their freedom, so the answer is abundantly clear.
This means Big Mom isn't done, as she's going to need to be forced to give back the lifespan of all the people she has robbed throughout the years.
Big Mom on Elbaf boys.... It's happening whether you like it or not.